qbiocode.apps.quvine.utils.utilities module

Summary

Functions:

draw_graph
get_stats
plot_metric
plot_metric_vs_k
plot_precision_recall
sample_walks_from_distribution	Generate pseudo-walks by sampling from RWR stationary distribution.

Reference

get_stats(graph)

draw_graph(cfg, G, source=None, target=None, title='Graph', file_path=None)

sample_walks_from_distribution(rwr_scores, num_walks=10, walk_length=40, rng=None, seed=None)

Generate pseudo-walks by sampling from RWR stationary distribution.

Parameters:

• rwr_scores (dict) – Node -> probability

• num_walks (int)

• walk_length (int)

• seed (int or None)

Return type:

List[List[node]]

plot_metric(cfg, df, metric, file_path=None)

plot_precision_recall(df, control='true', file_path=None)

plot_metric_vs_k(df, metric='precision', control='true', file_path=None)