qbiocode.apps.quvine.reproducibility package

Reproducibility Module for QuVINE

This module provides infrastructure for reproducible benchmarking: - Centralized seed management - Dataset registry - Pre-generated graph storage - Task-specific split generation and storage - Validation checks for experimental consistency

Submodules:

• qbiocode.apps.quvine.reproducibility.dataset_registry module
• qbiocode.apps.quvine.reproducibility.graph_generator module
• qbiocode.apps.quvine.reproducibility.method_adapters module
• qbiocode.apps.quvine.reproducibility.method_runner module
• qbiocode.apps.quvine.reproducibility.ppi_workflow module
• qbiocode.apps.quvine.reproducibility.seed_manager module
• qbiocode.apps.quvine.reproducibility.split_generator module
• qbiocode.apps.quvine.reproducibility.validator module

Summary

__all__ Classes:

DatasetRegistry	Central registry for all datasets used in QuVINE experiments.
GraphGenerator	Generates and saves synthetic graphs for reproducible benchmarking.
MethodRunner	Unified runner for all QuVINE methods using pre-generated data.
PPIGraphGenerator	Centralized PPI preprocessing pipeline.
PPIWorkflow	End-to-end workflow for centralized PPI preprocessing and split generation.
ReproducibilityValidator	Validates reproducibility constraints for QuVINE experiments.
SeedManager	Manages canonical and derived random seeds for reproducible experiments.
SplitGenerator	Generates and saves task-specific splits for reproducible benchmarking.
SyntheticGraphGenerator	Generates and saves synthetic graphs for reproducible benchmarking.

__all__ Functions:

build_default_ppi_workflow

Convenience constructor for the centralized PPI preprocessing workflow.