qbiocode.apps.quvine.baselines package#

Optional baseline embedding methods.

Every name below is re-exported for convenience only. The guards keep import qbiocode working when a baseline’s dependency is absent, but they do not make the method registry resilient – adapters imports from each module directly, so a genuinely broken baseline still fails loudly there, which is the correct outcome. What the guards must not do is fail silently: a shorter __all__ with no explanation is undiagnosable, so each failure is recorded in UNAVAILABLE and logged at DEBUG.

Submodules:

Summary#

__all__ Classes:

`GCNLayer`	Single Graph Convolutional Layer.
`GCNMF`	GCN-MF: Graph Convolutional Network with Matrix Factorization.
`GraphGPSConfig`	Hyperparameters for the GraphGPS encoder.
`GraphGPSTrainConfig`	Training config for unsupervised link reconstruction or node classification.
`QuVINEGCNMF`	QuVINE GCN-MF: GCN-MF with precomputed quantum-calibrated features.

__all__ Functions:

`generate_appnp_embedding`	Generate node embeddings using APPNP.
`generate_baseline_filter_embedding_wrapper`	Generate baseline graph filter embeddings (WITHOUT quantum calibration).
`generate_baseline_gcnmf_embedding`	Generate baseline GCN-MF embeddings (WITHOUT quantum calibration).
`generate_graphgps_embedding`	Generate embeddings using one feature variant followed by GraphGPS.
`generate_multiple_graphgps_embeddings`
`normalize_adjacency`	Normalize adjacency matrix: D^(-1/2) * A * D^(-1/2)
`precompute_quantum_diffusion`	Precompute quantum-calibrated diffusion OFFLINE (before training).
`run_appnp`	Run APPNP and return embeddings aligned to nodes.
`run_graphsage`	Unsupervised GraphSAGE embedding.
`run_netmf`	Run NetMF (Network Embedding as Matrix Factorization) on a graph.
`run_node2vec`	Run Node2Vec and return embeddings aligned to nodes.
`train_gcn_mf`	Train GCN-MF model.

__all__ Data:

UNAVAILABLE

Reference#

UNAVAILABLE: dict[str, str] = {}#: Maps a baseline module name to the reason it could not be imported. Empty on a complete install. Inspect it when an expected method is missing from qbiocode.apps.quvine.list_methods().